Summarized nxf-fastqc report
Report generated on 2021-12-13, 12:48 based on data in:
/Users/angelangelov/Desktop/code/nxf-fastqc/work/ea/f8654b45b2b0607580e90010053fd8/minigut_sample2_fastp.json
/Users/angelangelov/Desktop/code/nxf-fastqc/work/f5/61af33c8d27e3a50c2d2fb656bcf6f/minigut_sample1_fastp.json
General Statistics
Showing 2/2 rows and 3/5 columns.Sample Name | GC content | % PF | % Adapter |
---|---|---|---|
minigut_sample1_R1 | 46.8% | 99.6% | 0.0% |
minigut_sample2_R1 | 40.5% | 100.0% | 0.0% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
This is PE data
Total reads before filter: 150k
Total reads after filter: 150k
Total bases before filter: 20M
Total bases after filter: 20M
See also the report: fastq-stats-report.html, which contains per-read data about Phred-score and k-mer distribution, N50 etc.
The raw data from both reports (as *.csv files) can be found in the results folder.
Filtered Reads
Filtering statistics of sampled reads.
Sequence Quality
Average sequencing quality over each base of all reads.
GC Content
Average GC content over each base of all reads.
N content
Average N content over each base of all reads.