Summarized nxf-fastqc report

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        Note that additional data was saved in multiqc_report_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.10.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Summarized nxf-fastqc report

        Report generated on 2021-12-13, 12:48 based on data in:

        General Statistics

        Showing 2/2 rows and 3/5 columns.
        Sample NameGC content% PF% Adapter
        minigut_sample1_R1
        46.8%
        99.6%
        0.0%
        minigut_sample2_R1
        40.5%
        100.0%
        0.0%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        This is PE data
        Total reads before filter: 150k
        Total reads    after filter: 150k
        Total bases before filter: 20M
        Total bases    after filter: 20M

        See also the report: fastq-stats-report.html, which contains per-read data about Phred-score and k-mer distribution, N50 etc.
        The raw data from both reports (as *.csv files) can be found in the results folder.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.10.dev0 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.